Expression Data Collection

expression data was obtained from gene expression omnibus (geo) microarray datasets were extracted from geo family soft files using in house tools, and probe identifiers were mapped using platform annotation tables from the corresponding platform soft files rna seq data was obtained (if made available by ncbi) as raw counts matrices mapped by ncbi’s pipeline ( 1 docid\ wkte4dr3b0abzs0ur7uoe ) genes were translated to ensembl id using information from ncbi (as of 24 april 2024) and ensembl (v113) ( 2 docid\ wkte4dr3b0abzs0ur7uoe ) datasets from single cell studies were identified and downloaded manually gene identifier translation was performed as explained in the data pre processing docid\ xizqptdqqjnwo 5bz3gd3 section references ncbi generated rna seq count data beta geo ncbi (2024) (available at https //www ncbi nlm nih gov/geo/info/rnaseqcounts html https //www ncbi nlm nih gov/geo/info/rnaseqcounts html ) s c dyer, o austine orimoloye, a g azov, m barba, i barnes, v p barrera enriquez, a becker, r bennett, m beracochea, a berry, j bhai, s k bhurji, s boddu, p r branco lins, l brooks, s b ramaraju, l i campbell, m c martinez, m charkhchi, l a cortes, c davidson, s denni, k dodiya, s donaldson, b el houdaigui, t el naboulsi, o falola, r fatima, t genez, j g martinez, t gurbich, m hardy, z hollis, t hunt, m kay, v kaykala, d lemos, d lodha, n mathlouthi, g a merino, r merritt, l p mirabueno, a mushtaq, s n hossain, j g pérez silva, m perry, i piližota, d poppleton, i prosovetskaia, s raj, a i a salam, s saraf, n saraiva agostinho, s sinha, b sipos, v sitnik, e steed, m m suner, l surapaneni, k sutinen, f f tricomi, i tsang, d urbina gómez, a veidenberg, t a walsh, n l willhoft, j allen, j alvarez jarreta, m chakiachvili, j cheema, j b da rocha, n h de silva, s giorgetti, l haggerty, g r ilsley, j keatley, j e loveland, b moore, j m mudge, g naamati, j tate, s j trevanion, a winterbottom, b flint, a frankish, s e hunt, r d finn, m a freeberg, p w harrison, f j martin, a d yates, ensembl 2025 nucleic acids res 53, d948–d957 (2025) (available at https //academic oup com/nar/article/53/d1/d948/7916352 https //academic oup com/nar/article/53/d1/d948/7916352 )